PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01819.1.p
Common NameLOC105972544, MIMGU_mgv1a024106mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ZF-HD
Protein Properties Length: 109aa    MW: 12039.5 Da    PI: 9.3274
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01819.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.28.3e-282787258
       ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRreve 58
                      + vrY eC++NhAa + ghavDGC+Ef+++     +     a l CaACgCHRnFHRrev+
  Migut.D01819.1.p 27 AVVRYVECQRNHAAYIRGHAVDGCREFIAAAVGGKDltnvEAELSCAACGCHRNFHRREVV 87
                      579*************************9953332244456779**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.0E-242986IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1729102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-213086IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.93185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MKKRQEVMIT KKGSHNNNKR SARKSQAVVR YVECQRNHAA YIRGHAVDGC REFIAAAVGG  60
KDLTNVEAEL SCAACGCHRN FHRREVVEIT SEVVPDSYSS PSNNSTLY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852957.16e-76PREDICTED: mini zinc finger protein 3
SwissprotQ2Q4933e-24MIF3_ARATH; Mini zinc finger protein 3
TrEMBLA0A022Q9T86e-76A0A022Q9T8_ERYGU; Uncharacterized protein
STRINGfgenesh2_kg.1__2061__AT1G18835.17e-24(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11052486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-25mini zinc finger